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1.
Dalton Trans ; 2024 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-38700377

RESUMEN

Selective recognition of fructosyl amino acids in water by arylboronic acid-based receptors is a central field of modern supramolecular chemistry that impacts biological and medicinal chemistry. Fructosyl valine (FV) and fructosyl glycyl histidine (FGH) occur as N-terminal moieties of human glycated hemoglobin; therefore, the molecular design of biomimetic receptors is an attractive, but very challenging goal. Herein, we report three novel cationic Zn-terpyridine complexes bearing a fluorescent N-quinolinium nucleus covalently linked to three different isomers of strongly acidified phenylboronic acids (ortho-, 2Zn; meta-, 3Zn and para-, 4Zn) for the optical recognition of FV, FGH and comparative analytes (D-fructose, Gly, Val and His) in pure water at physiological pH. The complexes were designed to act as fluorescent receptors using a cooperative action of boric acid and a metal chelate. Complex 3Zn was found to display the most acidic -B(OH)2 group (pKa = 6.98) and exceptionally tight affinity for FV (K = 1.43 × 105 M-1) with a strong quenching analytical response in the micromolar concentration range. The addition of fructose and the other amino acids only induced moderate optical changes. On the basis of several spectroscopic tools (1H, 11B NMR, UV-Vis, and fluorescence titrations), ESI mass spectrometry, X-ray crystal structure, and DFT calculations, the interaction mode between 3Zn and FV is proposed in a 1 : 1 model through a cooperative two-point recognition involving a sp3 boronate-diol esterification with simultaneous coordination bonding of the carboxylate group of Val to the Zn atom. Fluorescence quenching is attributed to a static complexation photoinduced electron transfer mechanism as evidenced by lifetime experiments. The addition of FGH to 3Zn notably enhanced its emission intensity with micromolar affinity, but with a lower apparent binding constant than that observed for FV. FGH interacts with 3Zn through boronate-diol complexation and coordination of the imidazole ring of His. DFT-optimized structures of complexes 3Zn-FV and 3Zn-FGH show a picture of binding which shows that the Zn-complex has a suitable (B⋯Zn) distance to the two-point recognition with these analytes. Molecular recognition of fructosyl amino acids by transition-metal-based receptors has not been explored until now.

2.
RSC Adv ; 13(46): 32185-32198, 2023 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-37920759

RESUMEN

Selective recognition of saccharides by phenylboronic dyes capable of functioning in aqueous conditions is a central topic of modern supramolecular chemistry that impacts analytical sciences and biological chemistry. Herein, a new dicationic diboronic acid structure 11 was synthesized, structurally described by single-crystal X-ray diffraction, and studied in-depth as fluorescent receptor for six saccharides in pure water at pH = 7.4. This dicationic receptor 11 has been designed particularly to respond to sorbitol and involves two convergent and strongly acidified phenyl boronic acids, with a pKa of 6.6, that operate as binding sites. The addition of sorbitol in the micromolar concentration range to receptor 11 induces strong fluorescence change, but in the presence of fructose, mannitol, glucose, lactose and sucrose, only moderate optical changes are observed. This change in emission is attributed to a static complexation photoinduced electron transfer mechanism as evidenced by lifetime experiments and different spectroscopic tools. The diboronic receptor has a high affinity/selectivity to sorbitol (K = 31 800 M-1) over other saccharides including common interfering species such as mannitol and fructose. The results based on 1H, 11B NMR spectroscopy, high-resolution mass spectrometry and density functional theory calculations, support that sorbitol is efficiently bound to 11 in a 1 : 1 mode involving a chelating diboronate-sorbitol complexation. Since the experimental B⋯B distance (5.3 Å) in 11 is very close to the calculated distance from the DFT-optimized complex with sorbitol, the efficient binding is attributed to strong acidification and preorganization of boronic acids. These results highlight the usefulness of a new diboronic acid receptor with a strong ability for fluorescent recognition of sorbitol in physiological conditions.

3.
RSC Adv ; 13(40): 27672-27675, 2023 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-37727314

RESUMEN

This study examines the stability and protonation properties of four potential azahomocubanes. Through high-level ab initio computations, we find that 9-azahomocubane is the most stable isomer, closely followed by 5-azahomocubane, 1-azahomocubane, and 2-azahomocubane. However, understanding the stability of the systems with a nitrogen atom incorporated into a highly constrained polycyclic environment extends beyond mere bond angles or hybridization considerations. Strain energy analysis reveals that azahomocubanes experience less strain compared to their carbon congeners. An exploration of multiple solvents shows that their impact on relative energies and geometries is negligible. On the other hand, among the four isomers, 2-azahomocubane exhibits the highest tendency for protonation. Basicity, as assessed through the minimum electrostatic potential, correlates well with protonation affinities.

4.
Inorg Chem ; 62(17): 6629-6641, 2023 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-37079567

RESUMEN

Selective anion sensing by luminescent chemosensors capable of operating in aqueous conditions is a central field of modern supramolecular chemistry that impacts analytical and biological chemistry. A cationic cyclometalated [Pt(N^C^N)NCCH3]OTf complex, 1 [N^C^N = 1,3-bis(1-(p-tolyl)-benzimidazol-2'-yl)benzene, OTf = triflate], was prepared, structurally described by single-crystal X-ray diffraction and studied in-depth as a luminescent chemosensor for anions in aqueous phase and solid state. A series of related neutral [Pt(N^C^N)X] complexes (X = Cl, 2; CN, 3 and I, 4) were formed readily upon treatment of 1 with the respective NaX salt in aqueous media and were described structurally by X-ray diffraction. Complex 1 is hydrostable with phosphorescent green emission originated by intraligand transitions, and [dyz(Pt) → π*(N^C^N)] charge transfer transitions, as evidenced by TD-DFT calculations and lifetime. Additions of halides, pseudohalides, oxyanions, and dicarboxylates to a neutral aqueous solution of 1 modified its green emission intensity with a pronounced affinity (K = 1.5 × 105 M-1) and turn-on signal toward Cl- within the micromolar concentration range. Pt complex 1 is two orders of magnitude more selective for Cl- than the other halides, CN- and basic oxyanions. Such Cl- affinity for a metal-based chemosensor in aqueous media is still rare. On the basis of X-ray crystallographic analysis and multiple spectroscopic tools (NMR, UV-vis, luminescence, MS, lifetimes) the origin of this selectivity hinges on the cooperative three-point recognition involving one coordination bond (Pt-Cl) and two convergent short C-H···Cl- contacts. This strong affinity and efficient optical response can be utilized in quantitative Cl- sensing in real samples and solid-liquid extractions. Additionally, chloro-Pt complex, 2 may be relevant to bioimaging as a marker for cell nuclei, as revealed by its emission within living cells and intracellular distribution by confocal microscopic studies. These results demonstrate the usefulness of the new water-stable luminescent Pt-N^C^N complexes as effective analytical tools in anion sensing and extraction agents.

5.
Chem Sci ; 14(3): 525-532, 2023 Jan 18.
Artículo en Inglés | MEDLINE | ID: mdl-36741536

RESUMEN

Despite their long-known photochemical properties and their industrial value, the use of nitroarenes as a productive photochemical handle in organic synthesis has remained relatively unexplored. More specifically, the photochemical formation of nitrogen-sulfur bonds from nitroarenes remains to be demonstrated. Herein, we report the design and application of a sulfinate-nitroarene electron donor-acceptor (EDA) complex and its subsequent use in the first light mediated catalyst-free synthesis of N-hydroxy-sulfonamides. The presence of the EDA was assessed spectroscopically and studied via DFT and TD-DFT calculations. A total of 32 examples including both electron withdrawing and electron donating groups were synthesized under our oxygen- and water-tolerant conditions.

6.
Phys Chem Chem Phys ; 25(7): 5592-5601, 2023 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-36727265

RESUMEN

The nuclear waste problem is one of the main interests of rare earth and actinide element chemistry. Studies of actinide-containing compounds are at the frontier of the applications of current theoretical methods due to the need to consider relativistic effects and approximations to the Dirac equation in them. Here, we employ four-component relativistic quantum calculations and scalar approximations to understand the contribution of f-type atomic orbitals in the chemical bonding of actinides (Ac) to organic ligands. We studied the relativistic quantum structure of an isostructural family made of Plutonium (Pu), Americium (Am), Californium (Cf), and Berkelium (Bk) atoms with the redox-active model ligand DOPO (2,4,6,8-tetra-tert-butyl-1-oxo-1H-phenoxazin-9-olate). Crystallographic structures were available to validate our calculations for all mentioned elements except for Cf. In short, state-of-the-art relativistic calculations were performed at different levels of theory to investigate the influence of relativistic and electron correlation effects on geometrical structures and bonding energies of Ac-DOPO3 complexes (Ac = Pu, Am, Cf, and Bk): (1) the scalar (sc) and spin-orbit (so) relativistic zeroth order regular approximation (ZORA) within the hybrid density functional theory (DFT) and (2) the four-component Dirac equation with both the Dirac-Hartree-Fock (4c-DHF) and Lévy-Leblond (LL) Hamiltonians. We show that sr- and so-ZORA-DFT could be used as efficient theoretical models to first approximate the geometry and electronic properties of actinides which are difficult to synthesize or characterize, but knowing that the higher levels of theory, like the 4c-DHF, give closer results to experiments. We also performed spin-free 4c calculations of geometric parameters for the Americium and Berkelium compounds. To the best of our knowledge, this is the first time that these kinds of large actinide compounds (the largest contains 67 atoms and 421 electrons) have been studied with highly accurate four-component methods (all-electron calculations with 6131 basis functions for the largest compound). We show that relativistic effects play a key role in the contribution of f-type atomic orbitals to the frontier orbitals of Ac-DOPO3 complexes. The analysis of the results obtained applying different theoretical schemes to calculate bonding energies is also given.

7.
J Org Chem ; 88(4): 2174-2189, 2023 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-36735858

RESUMEN

Three new diboronic acid-substituted bisquinolinium salts were synthesized, structurally described by single-crystal X-ray diffraction, and studied in-depth as fluorescent receptors for six monosaccharides and two open-chain polyols in water at physiological pH. The dicationic pyridine-2,6-dicarboxamide-based receptors contain two N-quinolinium rings as the fluorescent units covalently linked to three different isomers of phenylboronic acid (ortho, 2; meta, 3; and para, 4) as chelating binding sites for polyols. Additions of glucose/fructose in the micromolar concentration range to receptors 2 and 3 induce significant fluorescence changes, but in the presence of arabinose, galactose, mannose, and xylose, only modest optical changes are observed. This optical change is attributed to a static photoinduced electron transfer mechanism. The meta-diboronic receptor 3 exhibited a high affinity/selectivity toward glucose (K = 3800 M-1) over other monosaccharides including common interfering species such as fructose and mannitol. Based on multiple spectroscopic tools, electrospray ionization high-resolution mass spectrometry, crystal structures, and density functional theory calculations, the binding mode between 3 and glucose is proposed as a 1:1 complex with the glucofuranose form involving a cooperative chelating diboronate binding. These results demonstrate the usefulness of a new set of cationic fluorescent diboronic acid receptors with a strong ability for optical recognition of glucose in the sub-millimolar concentration range.

8.
Molecules ; 27(12)2022 Jun 08.
Artículo en Inglés | MEDLINE | ID: mdl-35744802

RESUMEN

Intramolecular charge transfer (ICT) effects are responsible for the photoluminescent properties of coumarins. Hence, optical properties with different applications can be obtained by ICT modulation. Herein, four 3-acetyl-2H-chromen-2-ones (1a-d) and their corresponding fluorescent hybrids 3- (phenylhydrazone)-chromen-2-ones (2a-d) were synthesized in 74-65% yields. The UV-Vis data were in the 295-428 nm range. The emission depends on the substituent in position C-7 bearing electron-donating groups. Compounds 1b-d showed good optical properties due to the D-π-A structural arrangement. In compounds 2a-d, there is a quenching effect of fluorescence in solution. However, in the solid, an increase is shown due to an aggregation-induced emission (AIE) effect given by the rotational restraints and stacking in the crystal. Computational calculations of the HOMO-LUMO orbitals indicate high absorbance and emission values of the molecules, and gap values represent the bathochromic effect and the electronic efficiency of the compounds. Compounds 1a-d and 2a-d are good candidates for optical applications, such as OLEDs, organic solar cells, or fluorescence markers.


Asunto(s)
Cumarinas , Electrones , Cumarinas/química , Teoría Funcional de la Densidad , Espectrometría de Fluorescencia
9.
J Chem Theory Comput ; 18(7): 4555-4564, 2022 Jul 12.
Artículo en Inglés | MEDLINE | ID: mdl-35767461

RESUMEN

Various photosynthetic organisms have evolved to absorb light in different regions of the visible light spectrum, thus adapting to the various lighting conditions available on Earth. While most of these autotrophic organisms absorb wavelengths around the 700-800 nm region, some are capable of red-shifted absorptions above this range, but none as remarkably as Blastochloris viridis whose main absorption is observed at 1015 nm, approximately 220 nm (0.34 eV) lower in energy than their main constituent pigments, BChl-b, whose main absorption is observed at 795 nm. The structure of its light harvesting 1-reaction center was recently elucidated by cryo-EM; however, the electronic structure details behind this red-shifted absorption remain unattended. We used hybrid quantum mechanics/molecular mechanics (QM/MM) calculations to optimize one of the active centers and performed classical molecular dynamics (MD) simulations to sample conformations beyond the optimized structure. We did excited state calculations with the time-dependent density functional theory method at the CAM-B3LYP/cc-pVDZ level of theory. We reproduced the near IR absorption by sequentially modifying the number of components involved in our systems using representative structures from the calculated MD ensemble. Natural transition orbital analysis reveals the participation of the BChl-b fragments to the main transition in the native structure and the structures obtained from the QM/MM and MD simulations. H-bonding pigment-protein interactions play a role on the conformation stabilization and orientation; however, the bacteriochlorin ring conformations and the exciton delocalization are the most relevant factors to explain the red-shifting phenomenon.


Asunto(s)
Hyphomicrobiaceae , Electrónica , Hyphomicrobiaceae/metabolismo , Complejos de Proteína Captadores de Luz/química , Fotosíntesis
10.
Dalton Trans ; 51(20): 7899-7906, 2022 May 24.
Artículo en Inglés | MEDLINE | ID: mdl-35535973

RESUMEN

Stabilization of low oxidation gold anions as aurate or auride by organic ligands has long been a synthetic challenge, owing to the proneness of low-valent gold centres to cluster. Despite being the most electronegative metal, isolable gold(I) aurate complexes have only been obtained from a few σ-withdrawing organo- and organo-main group ligands. Stabilization of highly-reduced gold complexes by π-modulating redox active ligands has only been achieved by cyclic (amino)(alkyl)carbene (CAAC), which is limited to 1e--reduction to form neutral gold(0) complexes. This work reports a simple modular synthesis of a boron, nitrogen-containing heterocyclic carbene (ClBNC) at a gold(I) center through metal-assisted coupling between azadiboriridine and isocyanides. The anionic electrophilic ClBNC ligand in the gold(I) complex [(ClBNC)AuPMe3] (3a and 3b) allows a 2e--reduction to form the first η1-carbene aurate complex [(BNC)AuPMe3]Li(DME) (5a, DME = dimethoxyethane). Single crystal crystallographic analysis and computational studies of these complexes revealed a highly π-withdrawing character of the neutral 4π B,N-heterocyclic carbene (BNC) moiety and a 6π weakly aromatic character with π-donating properties to the gold(I) fragment in its reduced form, showcasing the first cyclic carbene ligand that allows electronic tunability between π-withdrawing (Fischer-type)- and π-donating (Schrock-type) properties.

11.
Molecules ; 26(14)2021 Jul 20.
Artículo en Inglés | MEDLINE | ID: mdl-34299644

RESUMEN

Metallodrugs form a large family of therapeutic agents against cancer, among which is cisplatin, a paradigmatic member. Therapeutic resistance and undesired side effects to Pt(II) related drugs, prompts research on different metal-ligand combinations with potentially enhanced biological activity. We present the synthesis and biological tests of novel palladium(II) complexes containing bisdemethoxycurcumin (BDMC) 1 and 2. Complexes were fully characterized and their structures were determined by X-ray diffraction. Their biological activity was assessed for several selected human tumor cell lines: Jurkat (human leukaemic T-cell lymphoma), HCT-116 (human colorectal carcinoma), HeLa (human cervix epitheloid carcinoma), MCF-7 (human breast adenocarcinoma), MDA-MB-231 (human mammary gland adenocarcinoma), A549 (human alveolar adenocarcinoma), Caco-2 (human colorectal carcinoma), and for non-cancerous 3T3 cells (murine fibroblasts). The cytotoxicity of 1 is comparable to that of cisplatin, and superior to that of 2 in all cell lines. It is a correlation between IC50 values of 1 and 2 in the eight studied cell types, promising a potential use as anti-proliferative drugs. Moreover, for Jurkat cell line, complexes 1 and 2, show an enhanced activity. DFT and docking calculations on the NF-κB protein, Human Serum Albumin (HSA), and DNA were performed for 1 and 2 to correlate with their biological activities.


Asunto(s)
Proliferación Celular/efectos de los fármacos , Complejos de Coordinación , Citotoxinas , ADN de Neoplasias , Diarilheptanoides , Simulación del Acoplamiento Molecular , Paladio , Células 3T3 , Animales , Células CACO-2 , Complejos de Coordinación/química , Complejos de Coordinación/farmacología , Citotoxinas/química , Citotoxinas/farmacología , ADN de Neoplasias/química , ADN de Neoplasias/metabolismo , Diarilheptanoides/química , Diarilheptanoides/farmacología , Ensayos de Selección de Medicamentos Antitumorales , Células HCT116 , Células HeLa , Humanos , Células Jurkat , Células MCF-7 , Ratones , Paladio/química , Paladio/farmacología
12.
Dalton Trans ; 50(12): 4255-4269, 2021 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-33688874

RESUMEN

Biological catecholamines such as l-DOPA and dopamine play vital physiological roles in the brain and are chemical indicators of human diseases. A new range of fluorescent Zn(ii)-terpyridine complexes are described and studied in-depth as chemosensors for catecholamine-based neurotransmitters and nucleosides in pure water. The new Zn-terpyridine-based chemosensors contain a cationic N-isoquinolinium nucleus as the optical indicator covalently linked to three different isomers of strongly acidified phenylboronic acids (ortho-, 2.Zn; meta-, 3.Zn and para-, 4.Zn, substituted derivatives) as catechol binding sites. The addition of l-DOPA, dopamine, epinephrine, l-tyrosine and nucleosides to Zn(ii)-boronic acid chemosensors at physiological pH quenches their blue emission with a pronounced selectivity and an unprecedented high affinity towards l-DOPA (log K = 6.01). This efficient response by l-DOPA was also observed in the presence of coexisting species in blood plasma and urine with a detection limit of 3.0 µmol L-1. A photoinduced electron transfer quenching mechanism with simultaneous chemosensor-l-DOPA complexation in both the excited and ground states is proposed. The fluorescence experimental observations show that the 2.Zn·eosin-Y adduct can be used as a selective naked-eye chemosensing ensemble for l-DOPA with a fast turn-on fluorescent response and color change from blue to green under UV light at the micromolar level. On the basis of multiple spectroscopic techniques (1H, 11B NMR, UV-Vis, and fluorescence), MS-ESI experiments, crystal structures, and DFT calculations, the binding mode between Zn(ii)-chemosensors and l-DOPA is proposed in a 1 : 1 model through a cooperative two-point recognition involving the reversible esterification of the boronic acid moiety with the aromatic diol fragment of l-DOPA together with the coordination of the carboxylate anion to the Zn(ii) atom with strong electrostatic contribution.


Asunto(s)
Ácidos Borónicos/química , Colorantes Fluorescentes/química , Neurotransmisores/análisis , Piridinas/química , Zinc/química , Cristalografía por Rayos X , Colorantes Fluorescentes/síntesis química , Modelos Moleculares , Estructura Molecular
13.
Chem Sci ; 12(47): 15603-15608, 2021 Dec 08.
Artículo en Inglés | MEDLINE | ID: mdl-35003590

RESUMEN

Generation of dihydrogen from water splitting, also known as water reduction, is a key process to access a sustainable hydrogen economy for energy production and usage. The key step is the selective reduction of a protic hydrogen to an accessible and reactive hydride, which has proven difficult at a p-block element. Although frustrated Lewis pair (FLP) chemistry is well known for water activation by heterolytic H-OH bond cleavage, to the best of our knowledge, there has been only one case showing water reduction by metal-free FLP systems to date, in which silylene (SiII) was used as the Lewis base. This work reports the molecular design and synthesis of an ortho-phenylene linked bisborane-functionalized phosphine, which reacts with water stoichiometrically to generate H2 and phosphine oxide quantitatively under ambient conditions. Computational investigations revealed an unprecedented multi-centered electron relay mechanism offered by the molecular framework, shuttling a pair of electrons from hydroxide (OH-) in water to the separated proton through a borane-phosphonium-borane path. This simple molecular design and its water reduction mechanism opens new avenues for this main-group chemistry in their growing roles in chemical transformations.

14.
Chemosphere ; 249: 126160, 2020 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-32065996

RESUMEN

Graphene oxide (GO) is widely used in different applications, however once released into the environment it can change its structure and affect the transport of important contaminants such as arsenic. In this work we show that UV radiation, even in the range of 28-74 µW/cm2 of irradiance up to 120 h of exposure, can induce important changes in the structure of graphene oxide, by eliminating -OH and CO functional groups. This reduction affected the stability of graphene oxide in water by decreasing its zeta potential from -41 to -37 mV at pH=7 with the increase of the exposure time. Our results showed that after 24 and 120 h of UV exposure, As(III) adsorption capacity decreased from 5 mg/g to 4.7 and 3.8 mg/g, respectively, suggesting a lower capacity to transport contaminants with time. Computer modelling showed that even a degraded GO structure can have an interaction energy of 223.84 kJ/mol with H3AsO3. Furthermore, we observed that the cytotoxicity of graphene oxide changed after being irradiated at 74 µW/cm2 for 120 h, showing 20% more cell viability compared to as-produced GO. Our results stress the importance of considering the microstructural and compositional changes that GO undergoes even under low irradiance and short periods, when studying its fate and behavior in the environment and possible applications in water treatment.


Asunto(s)
Arsénico/toxicidad , Grafito/química , Rayos Ultravioleta , Contaminantes Químicos del Agua/toxicidad , Adsorción , Arsénico/química , Modelos Químicos , Óxidos/química , Fenómenos Físicos , Agua , Contaminantes Químicos del Agua/química , Purificación del Agua
15.
J Chem Inf Model ; 60(3): 1445-1452, 2020 03 23.
Artículo en Inglés | MEDLINE | ID: mdl-32108480

RESUMEN

Theoretical calculation of equilibrium dissociation constants is a very computationally demanding and time-consuming process since it requires an extremely accurate computation of the solvation free energy changes for each of the species involved. By correlating the minimum surface electrostatic potential (VS,min) on the nitrogen atom of several aliphatic amino groups-calculated at the density functional theory (DFT) ωB97X-D/cc-pVDZ level of theory-we obtained regression models for each kind of substitution pattern from which we interpolate their corresponding pKb values with remarkable accuracy: primary R2 = 0.9519; secondary R2 = 0.9112; and tertiary R2 = 0.8172 (N = 20 for each family). These models were validated with tests sets (N = 5) with mean absolute error (MAE) values of 0.1213 (primary), 0.4407 (secondary), and 0.3057 (tertiary). Combining this ansatz with another previously reported by our group to estimate pKa values [Caballero-García, G.; et al. Molecules 2019, 24(1), 79] we are able to reproduce the isoelectric points of 13 amino acids with no titrable side chains with MAE = 0.4636 pI units.


Asunto(s)
Aminas , Aminoácidos , Punto Isoeléctrico , Electricidad Estática
16.
J Biomol Struct Dyn ; 38(14): 4098-4106, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31542995

RESUMEN

Two unnatural hydrophobic nucleotides, d5SICS (2,6-dimethyl-2H-isoquiniline-1-thione) and dNaM (2-methoxy-3-methylnaphthalene), were previously replicated in vivo by a modified E. coli strand, however, a consistent structure for their pairing in terms of specific and selective directional interactions remains elusive, as data from spectroscopy experiments and simulations are inconsistent. The proposed d5SICS-dNaM pairing has been suggested to be a stacked configuration as suggested by NMR data; simulations have failed to reproduce this configuration and a Watson-Crick like pairing is observed. Previously, we focused on reproducing the d5SICS-dNaM Unnatural Base Pair (UBP) paring using an older (bsc0) AMBER force field, which was not able to correctly reproduce the experimental data. We present our efforts to reproduce the experimental pairing using the current version of the AMBER DNA force fields (OL15 and bsc1), two water models (OPC and TIP3P) and external electrostatic stabilization by Mg2+ ions. Opposite to previously reported simulations, a Watson-Crick-like pairing with no hydrogen bonds persists throughout all our results. Despite our efforts to replicate the reported stacked conformation, we cannot confirm its plausibility nor obtain a consistent structure that is independent of the neighboring nucleotides. Communicated by Ramaswamy H. Sarma.


Asunto(s)
Escherichia coli , Simulación de Dinámica Molecular , Emparejamiento Base , Enlace de Hidrógeno , Nucleótidos
17.
Chemistry ; 26(3): 634-642, 2020 Jan 13.
Artículo en Inglés | MEDLINE | ID: mdl-31621965

RESUMEN

In recent years interest in the development of protocols that facilitate the oxidative addition of gold to access mild cross-coupling processes mediated by this metal has increased. In this context, we report herein that ascorbic acid, a natural and readily accessible antioxidant, can be used to accelerate the oxidative addition of aryldiazonium chlorides onto AuI . The aryl-AuIII species generated in this way, has been used to prepare 3-arylindoles in a one-pot protocol starting from anilines and para-, meta-, and ortho- substituted aryldiazonium chlorides. The mechanism underlying the oxidative addition has been examined in detail based on EPR analyses, cyclic voltammetry, and DFT calculations. Interestingly, we have found that in this protocol, the chloride atom induces the AuII /AuIII oxidation step.

18.
Mater Sci Eng C Mater Biol Appl ; 104: 109978, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31500000

RESUMEN

Eysenhardtia polystachya (EP) is an endemic Mexican plant that has been widely studied for its antidiabetic, antibacterial, and antioxidant properties. Several studies had reported the main components of EP, but their fluorescence properties had not been broadly studied. In a previous study we obtained extracts with different composition from this plant and they presented florescence. In this work we study fluorescent compounds from EP and evaluate their fluorescence properties. EP extracts were obtained by Soxhlet extraction with ethanol, samples were dried, and compounds were separated by column chromatography. Fluorescent fractions were classified apart from other fractions and characterized by Scanning electron microscopy (SEM), UV-Vis, Raman, FTIR and 1H NMR spectra. Additionally, we obtained functional nanomaterials (using silica nanoparticles). TD-DFT molecular calculations of the fluorescent components were carried out to compare their theoretical UV-Vis spectra to experimental results. Nine fractions were obtained by chromatography and five of them showed fluorescence. Fluorescence of extracts from Eysenhardtia polystachya is due to more than one component and we suggest that could be other hydrochalcones for which we present possible structures. This finding would help to dissipate questions about which component is responsible for fluorescence in extracts from the plant and in this way determinate the appropriate use for these fluorophores. Finally, the application and viability as a biosensor using pulmonary epithelium fibroblast cell culture IMR-90 was proved, and in the concentration used are non-toxic materials.


Asunto(s)
Fabaceae/química , Colorantes Fluorescentes/química , Extractos Vegetales/química , Técnicas Biosensibles/métodos , Línea Celular , Epitelio/efectos de los fármacos , Fibroblastos/efectos de los fármacos , Fluorescencia , Humanos , Pulmón/efectos de los fármacos , Nanopartículas/química , Dióxido de Silicio/química
19.
Molecules ; 24(1)2018 Dec 26.
Artículo en Inglés | MEDLINE | ID: mdl-30587832

RESUMEN

The theoretical calculation of pKa values for Brønsted acids is a challenging task that involves sophisticated and time-consuming methods. Therefore, heuristic approaches are efficient and appealing methodologies to approximate these values. Herein, we used the maximum surface electrostatic potential (VS,max) on the acidic hydrogen atoms of carboxylic acids to describe the H-bond interaction with water (the same descriptor that is used to characterize σ-bonded complexes) and correlate the results with experimental pKa values to obtain a predictive model for other carboxylic acids. We benchmarked six different methods, all including an implicit solvation model (water): Five density functionals and the Møller⁻Plesset second order perturbation theory in combination with six different basis sets for a total of thirty-six levels of theory. The ωB97X-D/cc-pVDZ level of theory stood out as the best one for consistently reproducing the reported pKa values, with a predictive power of 98% correlation in a test set of ten other carboxylic acids.


Asunto(s)
Ácidos Carboxílicos/química , Modelos Químicos , Modelos Moleculares , Enlace de Hidrógeno , Cinética , Estructura Molecular
20.
J Am Chem Soc ; 140(44): 14590-14594, 2018 11 07.
Artículo en Inglés | MEDLINE | ID: mdl-30365302

RESUMEN

A redox-regulated molecular tweezer complex was synthesized via the weak-link approach. The PtII complex features a redox-switchable hemilabile ligand (RHL) functionalized with a ferrocenyl moiety, whose oxidation state modulates the opening of a specific coordination site. Allosteric regulation by redox agents gives reversible access to two distinct structural states-a fully closed state and a semi-open state-whose interconversion was studied via multinuclear NMR spectroscopy, cyclic voltammetry, and UV-vis-NIR spectroscopy. Two structures in this four-state system were further characterized via SCXRD, while the others were modeled through DFT calculations. This fully reversible, RHL-based system defines an unusual level of electrochemical control over the occupancy of a specific coordination site, thereby providing access to four distinct coordination states within a single system, each defined and differentiated by structure and oxidation state.

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